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  4. The Sierra Platinum Service for generating peak-calls for replicated ChIP-seq experiments
 
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2018
Journal Article
Title

The Sierra Platinum Service for generating peak-calls for replicated ChIP-seq experiments

Abstract
Objective: Sierra Platinum is a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering. The required computing resources are optimized but still may exceed the resources available to researchers at biological research institutes. Results: Sierra Platinum Service provides the full functionality of Sierra Platinum: using a web interface, a new instance of the service can be generated. Then experimental data is uploaded and the computation of the peaks is started. Upon completion, the results can be inspected interactively and then downloaded for further analysis, at which point the service terminates.
Author(s)
Wiegreffe, Daniel
Universität Leipzig
Müller, Lydia
Universität Leipzig
Steuck, Jens
Universität Leipzig
Zeckzer, Dirk
Universität Leipzig
Stadler, Peter F.
Fraunhofer-Institut für Zelltherapie und Immunologie IZI  
Journal
BMC research notes. Online journal  
Open Access
DOI
10.1186/s13104-018-3633-x
Additional full text version
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Language
English
Fraunhofer-Institut für Zelltherapie und Immunologie IZI  
Keyword(s)
  • ChIP-seq

  • histone modification

  • peak-caller

  • replicate analysis

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