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Comparison of methods for splitting of touching and overlapping macrophages in fluorescent micrographs

 
: Held, C.; Wenzel, J.; Lang, R.; Palmisano, R.; Wittenberg, T.

:

Campilho, A.:
Image analysis and recognition : 9th international conference, ICIAR 2012. Proceedings. Part II : Aveiro, Portugal, June 25 - 27, 2012
Berlin: Springer, 2012 (Lecture Notes in Computer Science 7325)
ISBN: 978-3-642-31298-4
ISBN: 3-642-31297-7 (print)
ISBN: 978-3-642-31297-7 (print)
S.456-464
International Conference on Image Analysis and Recognition (ICIAR) <9, 2012, Aveiro>
Englisch
Konferenzbeitrag
Fraunhofer IIS ()

Abstract
The segmentation of complex touching and overlapping cells in fluorescent micrographs poses a challenge for automated image analysis systems. In order to improve performance for complex image data, multi-channel approaches exist that additionally incorporate information from the cell nuclei. The most frequently method used for fluorescent micrograph segmentation is the seeded watershed transform. But methods based on level sets and graph cuts can also be used as alternatives to the watershed transform based splitting of cells. In this work we investigate if segmentation results obtained by one of the named methods are superior in terms of segmentation performance. Therefore, a hybrid watershed transform based method, a very efficient fast marching cell splitting method and a cell splitting method based on graph cuts are described and investigated. For performance comparison the parameters of each method are automatically optimized toward a manual ground truth including cross validation techniques. Our evaluations show that for the presented dataset of bone marrow-derived macrophages the hybrid watershed transform based method can compete with both, the fast marching level set and the graph cut based method.

: http://publica.fraunhofer.de/dokumente/N-254453.html