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BEL2ABM: agent-based simulation of static models in Biological Expression Language

: Gündel, Michaela; Hoyt, Charles Tapley; Hofmann-Apitius, Martin

Fulltext ()

Bioinformatics 34 (2018), No.13, pp.2316-2318
ISSN: 1367-4803
ISSN: 1460-2059
Journal Article, Electronic Publication
Fraunhofer SCAI ()

While cause-and-effect knowledge assembly models encoded in Biological Expression Language are able to support generation of mechanistic hypotheses, they are static and limited in their ability to encode temporality. Here, we present BEL2ABM, a software for producing continuous, dynamic, executable agent-based models from BEL templates.