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Overview of the interactive task in BioCreative V

: Wang, Qinghua; Abdul, Shabbir Syed; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi Itzel; BatistaNavarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Fluck, Juliane; Gama, Socorro; Gkoutos, Georgios; Irin, Afroza Khanam; Jensen, Lars Juhl; Jimenez, Silvia; Jue, Toni Rose; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Salgado, David; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa Dhwani; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-aryamontri, Andrew; Laulederkind, Stan; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Auken, Kimberly Van; Lu, Zhiyong; Schaeffer, Mary; Hirschman, Lynette; Arighi, Cecilia

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Fifth BioCreative Challenge Evaluation Workshop 2015. Proceedings. Online resource : Sevilla, Spain, 9-11 September 2015
Sevilla, 2015
BioCreative Challenge Evaluation Workshop <5, 2015, Sevilla>
Conference Paper, Electronic Publication
Fraunhofer SCAI ()

Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful text mining tools, and providing a communication channel between the biocuration and the text mining communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and us ability of TM tools, as well as the generation of use cases, have been the focal point. The tasks proposed are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation with different commitment were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without text mining assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se. In this case, biocurators navigated the system by performing pre-designed tasks and they were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution, and discuss some findings for the systems tested.