Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2019Contribution of syndecans to cellular internalization and fibrillation of amyloid-β(1–42)
Letoha, T.; Hudák, A.; Kusz, E.; Pettkó-Szandtner, A.; Domonkos, I.; Jósvay, K.; Hofmann-Apitius, M.; Szilák, L.
Zeitschriftenaufsatz
2019Deep learning for clustering of multivariate clinical patient trajectories with missing values
Jong, Johann de; Emon, Mohammad Asif; Wu, Ping; Karki, Reagon; Sood, Meemansa; Godard, Patrice; Ahmad, Ashar; Vrooman, Henri; Hofmann-Apitius, Martin; Fröhlich, Holger
Zeitschriftenaufsatz
2019The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling
Mubeen, Sarah; Hoyt, Charles Tapley; Gemünd, André; Hofmann-Apitius, Martin; Fröhlich, Holger; Domingo-Fernandez, Daniel
Zeitschriftenaufsatz
2019PathMe: Merging and exploring mechanistic pathway knowledge
Domingo-Fernandez, D.; Mubeen, S.; Marín-Llaó, J.; Hoyt, C.T.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2019PTSD Biomarker Database: Deep Dive Metadatabase for PTSD Biomarkers, Visualizations and Analysis Tools
Domingo-Fernandez, Daniel; Provost, Allison; Kodamullil, Alpha Tom; Marín-Llaó, Josep; Lasseter, Heather; Diaz, Kristophe; Daskalakis, Nikolaos P.; Lancashire, Lee; Hofmann-Apitius, Martin; Haas, Magali
Zeitschriftenaufsatz
2019Publisher Correction: ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases (vol 4, 43, 2018)
Domingo-Fernandez, D.; Hoyt, C.T.; Bobis-Alvarez, C.; Marin-Llao, J.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2019Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
Hoyt, C.T.; Domingo-Fernández, D.; Aldisi, R.; Xu, L.; Kolpeja, K.; Spalek, S.; Wollert, E.; Bachman, J.; Gyori, B.M.; Greene, P.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2018BEL Commons: An environment for exploration and analysis of networks encoded in Biological Expression Language
Hoyt, Charles Tapley; Domingo-Fernandez, Daniel; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2018BEL2ABM: agent-based simulation of static models in Biological Expression Language
Gündel, Michaela; Hoyt, Charles Tapley; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2018ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases
Domingo-Fernández, D.; Hoyt, C.T.; Bobis-Álvarez, C.; Marín-Llaó, J.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2018Insights into the Folding of Disulfide-Rich μ-Conotoxins
Ajay Abisheck Paul George; Heimer, Pascal; Maaß, Astrid; Hamaekers, Jan; Hofmann-Apitius, Martin; Biswas, Arijit; Imhof, Diana
Zeitschriftenaufsatz
2018Multi-omic approach decodes paradoxes of the triple-negative breast cancer
Golubnitschaja, O.; Filep, N.; Yeghiazaryan, K.; Blom, H.J.; Hofmann-Apitius, M.; Kuhn, W.
Zeitschriftenaufsatz
2018A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities
Hoyt, Charles Tapley; Domingo-Fernandez, Daniel; Balzer, Nora; Güldenpfennig, Anka; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2018Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms
Khanna, Shashank; Domingo-Fernández, Daniel; Iyappan, Anandhi; Emon, Mohammad Asif; Hofmann-Apitius, Martin; Fröhlich, Holger
Zeitschriftenaufsatz
2017Analytical strategy to prioritize Alzheimer's disease candidate genes in gene regulatory networks using public expression data
Kawalia, S.B.; Raschka, T.; Naz, M.; Matos Simoes, R. de; Senger, P.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2017Big data and data repurposing - using existing data to answer new questions in vascular dementia research
Doubal, F.N.; Ali, M.; Batty, G.D.; Charidimou, A.; Eriksdotter, M.; Hofmann-Apitius, M.; Kim, Y.-H.; Levine, D.A.; Mead, G.; Mucke, H.A.M.; Ritchie, C.W.; Roberts, C.J.; Russ, T.C.; Stewart, R.; Whiteley, W.; Quinn, T.J.
Zeitschriftenaufsatz
2017Comorbidity analysis between alzheimer's disease and type 2 diabetes mellitus (T2DM) based on shared pathways and the role of T2DM drugs
Karki, R.; Kodamullil, A.T.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2017A comprehensive, cell specific microRNA catalogue of human peripheral blood
Juzenas, S.; Venkatesh, G.; Hübenthal, M.; Hoeppner, M.P.; Du, Z.G.; Paulsen, M.; Rosenstiel, P.; Senger, P.; Hofmann-Apitius, M.; Keller, A.; Kupcinskas, L.; Franke, A.; Hemmrich-Stanisak, G.
Zeitschriftenaufsatz
2017Knowledge-driven computational modeling in Alzheimer's disease research: Current state and future trends
Geerts, H.; Hofmann-Apitius, M.; Anastasio, T.J.
Zeitschriftenaufsatz
2017Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): A web server for mechanism enrichment
Domingo-Fernández, Daniel; Kodamullil, Alpha Tom; Iyappan, Anandhi; Naz, Mufassra; Emon, Mohammad Asif; Raschka, Tamara; Karki, Reagon; Springstubbe, Stephan; Ebeling, Christian; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2017Neuroimaging feature terminology: A controlled terminology for the annotation of brain imaging features
Iyappan, A.; Younesi, E.; Redolfi, A.; Vrooman, H.; Khanna, S.; Frisoni, G.B.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2017Novel approaches to develop community-built biological network models for potential drug discovery
Talikka, M.; Bukharov, N.; Hayes, W.S.; Hofmann-Apitius, M.; Alexopoulos, L.; Peitsch, M.C.; Hoeng, J.
Zeitschriftenaufsatz
2017Of mice and men: Comparative analysis of neuro-inflammatory mechanisms in human and mouse using cause-and-effect models
Kodamullil, A.T.; Iyappan, A.; Karki, R.; Madan, S.; Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2017Systematic Analysis of GWAS Data Reveals Genomic Hotspots for Shared Mechanisms between Neurodegenerative Diseases
Naz, Mufassra; Younesi, Erfan; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2017Towards a 21st-century roadmap for biomedical research and drug discovery: Consensus report and recommendations
Langley, G.R.; Adcock, I.M.; Busquet, F.; Crofton, K.M.; Csernok, E.; Giese, C.; Heinonen, T.; Herrmann, K.; Hofmann-Apitius, M.; Landesmann, B.; Marshall, L.J.; McIvor, E.; Muotri, A.R.; Noor, F.; Schutte, K.; Seidle, T.; Stolpe, A. van de; Esch, H. van; Willett, C.; Woszczek, G.
Zeitschriftenaufsatz
2017Trial watch: Tracing investment in drug development for Alzheimer disease
Kodamullil, Alpha Tom; Zekri, Firas; Sood, Meemansa; Hengerer, Bastian; Canard, Luc; McHale, Duncan; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2017Using drugs as molecular probes: A computational chemical biology approach in neurodegenerative diseases
Emon, Mohammad Asif; Kodamullil, A.T.; Karki, R.; Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2016NeuroRDF: Semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease
Iyappan, A.; Kawalia, S.B.; Raschka, T.; Hofmann-Apitius, M.; Senger, P.
Zeitschriftenaufsatz
2016Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases
Naz, Mufassra; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2016Towards a pathway inventory of the human brain for modeling disease mechanisms underlying neurodegeneration
Iyappan, A.; Gündel, M.; Shahid, M.; Wang, J.; Li, H.; Mevissen, H.-T.; Müller, B.; Fluck, J.; Jirsa, V.; Domide, L.; Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2015Bioinformatics mining and modeling methods for the identification of disease mechanisms in neurodegenerative disorders
Hofmann-Apitius, Martin; Ball, Gordon; Gebel, Stephan; Bagewadi, Shweta; Bono, Bernard de; Schneider, Reinhard; Page, Matt; Kodamullil, Alpha Tom; Younesi, Erfan; Ebeling, Christian; Tegnér, Jesper; Canard, Luc
Zeitschriftenaufsatz
2015Boosting translational research on Alzheimer's disease in Europe: The Innovative Medicine Initiative AD research platform
Vaudano, E.; Vannieuwenhuyse, B.; Geyten, S. van der; Lei, J. van der; Visser, P.J.; Streffer, J.; Ritchie, C.; McHale, D.; Lovestone, S.; Hofmann-Apitius, M.; Truyen, L.; Goldman, M.
Zeitschriftenaufsatz
2015Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis
Kodamullil, A.T.; Younesi, E.; Naz, M.; Bagewadi, S.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2015Computational modelling approaches on epigenetic factors in neurodegenerative and autoimmune diseases and their mechanistic analysis
Irin, Afroza Khanam; Kodamullil, Alpha Tom; Gündel, Michaela; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2015Construction of biological networks from unstructured information based on a semi-automated curation workflow
Szostak, Justyna; Ansari, Sam; Madan, Sumit; Fluck, Juliane; Talikka, Marja; Iskandar, Anita; Leon, Hector de; Hofmann-Apitius, Martin; Peitsch, Manuel C.; Hoeng, Julia
Zeitschriftenaufsatz
2015Detecting miRNA mentions and relations in biomedical literature
Bagewadi, S.; Bobic, T.; Hofmann-Apitius, M.; Fluck, J.; Klinger, R.
Zeitschriftenaufsatz
2015Exploring novel mechanistic insights in Alzheimer's disease by assessing reliability of protein interactions
Malhotra, A.; Younesi, E.; Sahadevan, S.; Zimmermann, J.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2015Identification of gene co-expression clusters in liver tissues from multiple porcine populations with high and low backfat androstenone phenotype
Sahadevan, S.; Tholen, E.; Grosse-Brinkhaus, C.; Schellander, K.; Tesfaye, D.; Hofmann-Apitius, M.; Cinar, M.U.; Gunawan, A.; Hölker, M.; Neuhoff, C.
Zeitschriftenaufsatz
2015Is dementia research ready for big data approaches?
Hofmann-Apitius, M.
Zeitschriftenaufsatz
2015Knowledge retrieval from PubMed abstracts and electronic medical records with the multiple sclerosis ontology
Malhotra, A.; Gündel, M.; Rajput, A.M.; Mevissen, H.T.; Saiz, A.; Pastor, X.; Lozano-Rubi, R.; Martinez-Lapsicina, E.H.; Zubizarreta, I.; Mueller, B.; Kotelnikova, E.; Toldo, L.; Hofmann-Apitius, M.; Villoslada, P.
Zeitschriftenaufsatz
2015NeuroTransDB: Highly curated and structured transcriptomic metadata for neurodegenerative diseases
Bagewadi, Shweta; Adhikari, Subash; Dhrangadhariya, Anjani; Irin, Afroza Khanam; Ebeling, Christian; Namasivayam, Aishwarya Alex; Page, Matthew; Hofmann-Apitius, Martin; Senger, Philipp
Zeitschriftenaufsatz
2015PDON: Parkinson's disease ontology for representation and modeling of the Parkinson's disease knowledge domain
Younesi, E.; Malhotra, A.; Gündel, M.; Scordis, P.; Kodamullil, A.T.; Page, M.; Müller, B.; Springstubbe, S.; Wüllner, U.; Scheller, D.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2015Systems approach for the selection of micro-RNAs as therapeutic biomarkers of anti-EGFR monoclonal antibody treatment in colorectal cancer
Deyati, Avisek; Bagewadi, Shweta; Senger, Philipp; Hofmann-Apitius, Martin; Novac, Natalia
Zeitschriftenaufsatz
2015Towards the taxonomy of human disease. Editorial
Hofmann-Apitius, Martin; Alarcon-Riquelme, M.E.; Chamberlain, C.; McHale, D.
Zeitschriftenaufsatz
2014ADO: A disease ontology representing the domain knowledge specific to Alzheimer's disease
Malhotra, A.; Younesi, E.; Gündel, M.; Müller, B.; Heneka, M.T.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2014BELIEF - a semiautomatic workflow for BEL network creation
Fluck, Juliane; Madan, Sumit; Ansari, Sam; Szostak, Justyna; Hoeng, Julia; Zimmermann, Marc; Hofmann-Apitius, Martin; Peitsch, Manuel C
Konferenzbeitrag
2014CSEO - The Cigarette Smoke Exposure Ontology
Younesi, E.; Ansari, S.; Guendel, M.; Ahmadi, S.; Coggins, C.; Hoeng, J.; Hofmann-Apitius, M.; Peitsch, M.C.
Zeitschriftenaufsatz
2014Linking hypothetical knowledge patterns to disease molecular signatures for biomarker discovery in Alzheimer's disease
Malhotra, Ashutosh; Younesi, Erfan; Bagewadi, Shweta; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2014NeuroRDF: Semantic data integration strategies for modeling neurodegenerative diseases
Iyappan, Anandhi; Bagewadi, Shweta; Page, Matthew; Hofmann-Apitius, Martin; Senger, Philipp
Konferenzbeitrag
2014A new optimization phase for scientific workflow management systems
Holl, S.; Zimmermann, O.; Palmblad, M.; Mohammed, Y.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2014Pathway based analysis of genes and interactions influencing porcine testis samples from boars with divergent androstenone content in back fat
Sahadevan, S.; Gunawan, A.; Tholen, E.; Große-Brinkhaus, C.; Tesfaye, D.; Schellander, K.; Hofmann-Apitius, M.; Cinar, M.U.; Uddin, M.J.
Zeitschriftenaufsatz
2013'HypothesisFinder:' A strategy for the detection of speculative statements in scientific text
Malhotra, A.; Younesi, E.; Gurulingappa, H.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2013Biomarker-guided translation of brain imaging into disease pathway models
Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2013Challenges and opportunities for oncology biomarker discovery
Younesi, Erfan; Hofmann-Apitius, Martin; Dyati, Avisek; Novac, Natalia
Zeitschriftenaufsatz
2013Challenges in mining the literature for chemical information
Gurulingappa, H.; Mudi, A.; Toldo, L.; Hofmann-Apitius, M.; Bhate, J.
Zeitschriftenaufsatz
2013From integrative disease modeling to predictive, preventive, personalized and participatory (P4) medicine
Younesi, Erfan; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2013HuPSON: The human physiology simulation ontology
Gündel, Michaela; Younesi, Erfan; Malhotra, Ashutosh; Wang, Jiali; Li, Hui; Zhang, Bijun; Bono, Bernard de; Mevissen, Heinz-Theodor; Hofmann-Apitius, Martin
Zeitschriftenaufsatz
2013A network model of genomic hormone interactions underlying dementia and its translational validation through serendipitous off-target effect
Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2013SCAI: Extracting drug-drug interactions using a rich feature vector
Bobic, Tamara; Fluck, Juliane; Hofmann-Apitius, Martin
Konferenzbeitrag
2013SVM based descriptor selection and classification of neurodegenerative disease drugs for pharmacological modeling
Shahid, M.; Cheema, M.S.; Klenner, A.; Younesi, E.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2012Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports
Gurulingappa, Harsha; Rajput, Abdul-Mateen; Roberts, Angus; Fluck, Juliane; Hofmann-Apitius, Martin; Toldo, Luca
Zeitschriftenaufsatz
2012Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions
Bobic, T.; Klinger, R.; Thomas, P.; Hofmann-Apitius, M.
Konferenzbeitrag
2012Mining biomarker information in biomedical literature
Younesi, Erfan; Toldo, Luca; Müller, Bernd; Friedrich, Christoph M.; Novac, Natalia; Scheer, Alexander; Hofmann-Apitius, Martin; Fluck, Juliane
Zeitschriftenaufsatz
2012A new optimization phase for scientific workflow management systems
Holl, S.; Zimmermann, O.; Hofmann-Apitius, M.
Konferenzbeitrag
2012Secure multi-level parallel execution of scientific workflows on HPC grid resources by combining taverna and UNICORE services
Holl, S.; Zimmermann, O.; Demuth, B.; Schuller, B.; Hofmann-Apitius, M.
Konferenzbeitrag
2012Text mining in livestock animal science: Introducing the potential of text mining to animal sciences
Sahadevan, S.; Hofmann-Apitius, M.; Schellander, K.; Tesfaye, D.; Fluck, J.; Friedrich, C.M.
Zeitschriftenaufsatz
2012Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction
Thomas, P.; Bobic, T.; Hofmann-Apitius, M.; Leser, U.; Klinger, R.
Konferenzbeitrag
2011Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers
Thomas, P.E.; Klinger, R.; Furlong, L.I.; Hofmann-Apitius, M.; Friedrich, C.M.
Zeitschriftenaufsatz
2011Information retrieval framework for technology survey in biomedical and chemistry literature
Gurulingappa, Harsha; Müller, Bernd; Hofmann-Apitius, Martin; Fluck, Juliane
Konferenzbeitrag
2011PLIO: An ontology for formal description of protein-ligand interactions
Ivchenko, O.; Younesi, E.; Shahid, M.; Wolf, A.; Müller, B.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2011A semantic platform for information retrieval from e-health records
Gurulingappa, Harsha; Müller, Bernd; Hofmann-Apitius, Martin; Fluck, Juliane
Konferenzbeitrag
2011A UNICORE plugin for HPC-enabled scientific workflows in Taverna 2.2
Holl, S.; Zimmermann, O.; Hofmann-Apitius, M.
Konferenzbeitrag
2010Abstracts versus full texts and patents: A quantitative analysis of biomedical entities
Müller, B.; Klinger, R.; Gurulingappa, H.; Mevissen, H.-T.; Hofmann-Apitius, M.; Fluck, J.; Friedrich, C.M.
Konferenzbeitrag
2010Concept identification and assertion classification in patient health records
Gurulingappa, H.; Hofmann-Apitius, M.; Fluck, J.
Konferenzbeitrag
2010DockFlow: Achieving interoperability of protein docking tools across heterogeneous grid middleware
Azam, N.; Ghanem, M.; Kalaitzopoulos, D.; Wolf, A.; Kasam, V.; Wang, Y.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2010An empirical evaluation of resources for the identification of diseases and adverse effects in biomedical literature
Gurulingappa, H.; Klinger, R.; Hofmann-Apitius, M.; Fluck, J.
Konferenzbeitrag
2010An improved weighted-residue profile based method of using protein-ligand interaction information in increasing hits selection from virtual screening
Shahid, M.; Kasam, V.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2010In silico drug discovery approaches on grid computing infrastructures
Wolf, A.; Shahid, M.; Kasam, V.; Ziegler, W.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2010Prior art search in chemistry patents based on semantic concepts and co-citation analysis
Gurulingappa, H.; Müller, B.; Klinger, R.; Mevissen, H.-T.; Hofmann-Apitius, M.; Friedrich, C.M.; Fluck, J.
Konferenzbeitrag
2009@neuLink - Knowledge Discovery in Unstructured and Structured Data Sources
Friedrich, C.M.; Ebeling, C.; Engelbrecht, G.; Furlong, L.I.; Fornes, O.; Bauer-Mehren, A.; Pastor, M.; Oliva, B.; Sanz, F.; Risselada, R.; Cruz-Villa, M.; Frangi, A.; Cambien, F.; Yilmaz, S.; McGregor, J.; Böker, M.; Hofmann-Apitius, M.
Poster
2009Concept-based semi-automatic classification of drugs
Gurulingappa, H.; Kolarik, C.; Hofmann-Apitius, M.; Fluck, J.
Zeitschriftenaufsatz
2009Direct use of information extraction from scientific text for modeling and simulation in the life sciences
Hofmann-Apitius, M.; Younesi, E.; Kasam, V.
Konferenzbeitrag, Zeitschriftenaufsatz
2009DockFlow - a prototypic PharmaGrid for virtual screening integrating four different docking tools
Wolf, A.; Hofmann-Apitius, M.; Ghanem, M.; Azam, N.; Kalaitzopoulos, D.; Yu, K.; Kasam, V.
Konferenzbeitrag
2009Healthgrid research, innovation and business case
: Solomonides, T.; Hofmann-Apitius, M.; Freudigmann, M.; Semler, S.C.; Legré, Y.; Kratz, M.
Tagungsband
2009Identification of histone modifications in biomedical text for supporting epigenomic research
Kolarik, C.; Klinger, R.; Hofmann-Apitius, M.
Zeitschriftenaufsatz, Konferenzbeitrag
2009Linking chemical and biological information with natural language processing
Kolarik, C.; Hofmann-Apitius, M.
Aufsatz in Buch
2009Patent retrieval in chemistry based on semantically tagged named entities
Gurulingappa, H.; Müller, B.; Klinger, R.; Mevissen, H.-T.; Hofmann-Apitius, M.; Fluck, J.; Friedrich, C.M.
Konferenzbeitrag
2009A robust framework for rapid deployment of a virtual screening laboratory
Shahid, M.; Hofmann-Apitius, M.; Wäldrich, O.; Ziegler, W.
Konferenzbeitrag
2009WISDOM-II: Screening against multiple targets implicated in malaria using computational grid infrastructures
Kasam, V.; Salzemann, J.; Botha, M.; Dacosta, A.; Degliesposti, G.; Isea, R.; Kim, D.; Maaß, A.; Kenyon, C.; Rastelli, G.; Hofmann-Apitius, M.; Breton, V.
Zeitschriftenaufsatz
2009Workflows for data mining in integrated multi-modal data of intracranial aneurysms using KNIME
Risselada, R.; Friedrich, C.M.; Ebeling, C.; Klinger, R.; Bauer-Mehren, A.; Pastor, M.; Cruz Villa, M.; Pozo, J.M.; Frangi, A.F.; Hofmann-Apitius, M.
Konferenzbeitrag
2008@neuLink: A service-oriented application for biomedical knowledge discovery
Friedrich, C.M.; Dach, H.; Gattermayer, T.; Engelbrecht, G.; Benkner, S.; Hofmann-Apitius, M.
Konferenzbeitrag
2008@neurIST - Towards a system architecture for advanced disease management through integration of heterogeneous data, computing, and complex processing services
Rajasekaran, H.; Lo Iacono, L.; Hasselmeyer, P.; Fingberg, J.; Summers, P.; Benkner, S.; Engelbrecht, G.; Arbona, A.; Chiarini, A.; Friedrich, C.M.; Hofmann-Apitius, M.; Kumpf, K.; Moore, B.; Bijlenga, P.; Iavindrasana, J.; Mueller, H.; Hose, R.D.; Dunlop, R.; Frangi, A.
Konferenzbeitrag
2008The @neurIST project
Iavindrasana, J.; Lo Iacono, L.; Müller, H.; Periz, I.; Summers, P.; Wright, J.; Friedrich, C.M.; Dach, H.; Gattermayer, T.; Engelbrecht, G.; Benkner, S.; Hofmann-Apitius, M.; Dunlop, R.; Arbona, A.; Rajasekaran, H.; Fingberg, J.; Chiarini, A.; Moore, B.; Bijlenga, P.; Hose, R.D.; Frangi, A.
Konferenzbeitrag
2008Chemical names: Terminological resources and corpora annotation
Kolarik, C.; Klinger, R.; Friedrich, C.M.; Hofmann-Apitius, M.; Fluck, J.
Konferenzbeitrag
2008Detection of IUPAC and IUPAC-like chemical names
Klinger, R.; Kolarik, C.; Fluck, J.; Hofmann-Apitius, M.; Friedrich, C.M.
Zeitschriftenaufsatz
2008Grid-added value to address malaria
Breton, V.; Jacq, N.; Kasam, V.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2008Initial results on knowledge discovery and decision support for intracranial aneurysms
Friedrich, C.M.; Hofmann-Apitius, M.; Dunlop, R.; Chronakis, I.; Sturkenboom, M.C.; Risselada, R.; Oliva, B.; Sanz, F.
Konferenzbeitrag
2008Knowledge environments representing molecular entities for the virtual physiological human
Hofmann-Apitius, M.; Fluck, J.; Furlong, L.I.; Fornes, O.; Kolarik, C.; Hanser, S.; Boeker, M.; Schulz, S.; Sanz, F.; Klinger, R.; Mevissen, T.; Gattermayer, T.; Oliva, B.; Friedrich, C.M.
Zeitschriftenaufsatz
2008Knowledge structuring and retrieval for intracranial aneurysm research
Hanser, S.; Fluck, J.; Furlong, L.I.; Friedrich, C.M.; Hofmann-Apitius, M.; Stenzhorn, H.; Boeker, M.
Poster
2008OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature
Furlong, L.I.; Dach, H.; Hofmann-Apitius, M.; Sanz, F.
Zeitschriftenaufsatz
2008Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation
Ruau, D.; Kolarik, C.; Mevissen, H.-T.; Müller, E.; Assent, I.; Krieger, R.; Seidl, T.; Hofmann-Apitius, M.; Zenke, M.
Konferenzbeitrag, Zeitschriftenaufsatz
2008Virtual high throughput screening (vHTS) on an optical high speed testbed
Shahid, M.; Ziegler, W.; Kasam, V.; Zimmermann, M.; Hofmann-Apitius, M.
Konferenzbeitrag
2007Alternative to consensus scoring - A new approach toward the qualitative combination of docking algorithms
Wolf, A.; Zimmermann, M.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2007Automatic recognition of chemical images
Algorri, M.-E.; Zimmermann, M.; Hofmann-Apitius, M.
Konferenzbeitrag
2007Design of new plasmepsin inhibitors
Kasam, V.; Zimmermann, M.; Maaß, A.; Schwichtenberg, H.; Wolf, A.; Jacq, N.; Breton, V.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2007From genes to personalized HealthCare. Grid solutions for the life sciences. Proceedings of HealthGrid 2007
: Jacq, N.; Müller, H.; Blanquer, I.; Legré, Y.; Breton, V.; Hausser, D.; Hernandez, V.; Solomonides, T.; Hofmann-Apitius, M.
Tagungsband
2007Identification of new drug classification terms in textual resources
Kolarik, C.; Hofmann-Apitius, M.; Zimmermann, M.; Fluck, J.
Zeitschriftenaufsatz
2007Identifying gene specific variants in biomedical text
Klinger, R.; Furlong, L.I.; Friedrich, C.M.; Mevissen, H.-T.; Fluck, J.; Sanz, F.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2007Named entity recognition with combinations of conditional random fields
Klinger, R.; Friedrich, C.M.; Fluck, J.; Hofmann-Apitius, M.
Konferenzbeitrag
2007ProMiner: Recognition of human gene and protein names using regularly updated dictionaries
Fluck, J.; Mevissen, T.H.; Dach, H.; Oster, M.; Hofmann-Apitius, M.
Konferenzbeitrag
2007Reconstruction of chemical molecules from images
Algorri, M.-E.; Zimmermann, M.; Friedrich, C.M.; Akle, S.; Hofmann-Apitius, M.
Konferenzbeitrag
2007Understanding cerebral aneurysms - the @neurIST project
Frangi, A.F.; Ruiz, A.; Hofmann-Apitius, M.
Zeitschriftenaufsatz
2006Bayesian network modeling for the prediction of treatment outcomes of intracranial aneurysms
Beibei, H.; Friedrich, C.M.; Manthey, R.; Hofmann-Apitius, M.
Konferenzbeitrag
2006Integration and mining of malaria molecular, functional and pharmacological data: How far are we from a chemogenomic knowledge space?
Birkholtz, L.-M.; Bastien, O.; Wells, G.; Grando, D.; Joubert, F.; Kasam, V.; Zimmermann, M.; Ortet, P.; Jacq, N.; Saïdani, N.; Roy, S.; Hofmann-Apitius, M.; Breton, V.; Louw, A.I.; Maréchal, E.
Zeitschriftenaufsatz
2006Towards a development of a text-mining system for genes, sequence variants and phenotypes
Furlong, L.I.; Dach, H.; Hofmann-Apitius, M.; Sanz, F.
Poster