Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2017Keeping it complicated: Mitochondrial genome plasticity across diplonemids
Valach, Matus; Moreira, Sandrine; Hoffmann, Steve; Stadler, Peter F.; Burger, Gertraud
Zeitschriftenaufsatz
2016Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis
Hezaveh, Kebria; Kloetgen, Andreas; Bernhart, Stephan H.; Mahapatra, Kunal Das; Lenze, Dido; Richter, Julia; Haake, Andrea; Bergmann, Anke K.; Brors, Benedikt; Burkhardt, Birgit; Claviez, Alexander; Drexler, Hans G.; Eils, Roland; Haas, Siegfried; Hoffmann, Steve; Karsch, Dennis; Klapper, Wolfram; Kleinheinz, Kortine; Korbel, Jan; Kretzmer, Helene; Kreuz, Markus; Küppers, Ralf; Lawerenz, Chris; Leich, Ellen; Loeffler, Markus; Mantovani-Loeffler, Luisa; López, Cristina; McHardy, Alice C.; Möller, Peter; Rohde, Marius; Rosenstiel, Philip; Rosenwald, Andreas; Schilhabel, Markus; Schlesner, Matthias; Scholz, Ingrid; Stadler, Peter F.; Stilgenbauer, Stephan; Sungalee, Stéphanie; Szczepanowski, Monika; Trümper, Lorenz; Weniger, Marc A.; Siebert, Reiner; Borkhardt, Arndt; Hummel, Michael; Hoell, Jessica I.
Zeitschriftenaufsatz
2016Metilene: Fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
Jühling, Frank; Kretzmer, Helene; Bernhart, Stephan H.; Otto, Christian; Stadler, Peter F.; Hoffmann, Steve
Zeitschriftenaufsatz
2015A simple data-adaptive probabilistic variant calling model
Hoffmann, Steve; Stadler, Peter F.; Strimmer, Korbinian
Zeitschriftenaufsatz
2014Lacking alignments? The next-generation sequencing mapper segemehl revisited
Otto, Christian; Stadler, Peter F.; Hoffmann, Steve
Zeitschriftenaufsatz
2014A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Hoffmann, Steve; Otto, Christian; Doose, Gero; Tanzer, Andrea; Langenberger, David; Christ, Sabina; Kunz, Manfred; Holdt, Lesca M.; Teupser, Daniel; Hackermüller, Jörg; Stadler, Peter F.
Zeitschriftenaufsatz
2013Dicer-processed small RNAs: Rules and exceptions
Langenberger, David; Cakir, M. Volkan; Hoffmann, Steve; Stadler, Peter F.
Zeitschriftenaufsatz
2013Mapping the RNA-Seq trash bin: Unusual transcripts in prokaryotic transcriptome sequencing data
Doose, Gero; Alexis, Maria; Kirsch, Rebecca; Findeiß, Sven; Langenberger, David; Machné, Rainer; Mörl, Mario; Hoffmann, Steve; Stadler, Peter F.
Zeitschriftenaufsatz
2012deepBlockAlign: A tool for aligning RNA-seq profiles of read block patterns
Langenberger, D.; Pundhir, Sachin; Ekstrom, Claus T.; Stadler, Peter F.; Hoffmann, Steve; Gorodkin, Jan
Zeitschriftenaufsatz
2012Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
Schmidtke, Cornelius; Findeiß, Sven; Sharma, Cynthia M.; Kuhfuß, Juliane; Hoffmann, Steve; Vogel, Jörg; Stadler, Peter F.; Bonas, Ulla
Zeitschriftenaufsatz
2011DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
Fasold, Mario; Langenberger, David; Binder, Hans; Stadler, Peter F.; Hoffmann, Steve
Zeitschriftenaufsatz
2010Identification and classification of small RNAs in transcriptome sequence data
Langenberger, D.; Bermudez-Santana, Clara; Stadler, Peter F.; Hoffmann, Steve
Konferenzbeitrag
2009Evolution of vault RNAs
Stadler, Peter F.; Chen, Julian J.-L.; Hackermüller, Jörg; Hoffmann, Steve; Horn, Friedemann; Khaitovich, Phillip; Kretzschmar, Antje K.; Mosig, Axel; Prohaska, Sonja J.; Qi, Xiaodong; Schutt, Katharina; Ullmann, Kerstin
Zeitschriftenaufsatz
2009Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Hoffmann, Steve; Otto, Christian; Kurtz, Stefan; Sharma, Cynthia M.; Khaitovich, Philipp; Vogel, Jörg; Stadler, Peter F.; Hackermüller, Jörg
Zeitschriftenaufsatz