Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2017Automatic extraction of BEL-statements based on neural networks
Ali, Mehdi; Madan, Sumit; Fischer, Asja; Petzka, Henning; Fluck, Juliane
Konferenzbeitrag
2017The cloud4health Project. Secondary use of clinical data with secure cloud-based text mining services
Fluck, Juliane; Senger, Philipp; Ziegler, Wolfgang; Claus, Steffen; Schwichtenberg, Horst
Aufsatz in Buch
2017Document clustering using a graph covering with pseudostable sets
Dörpinghaus, Jens; Schaaf, Sebastian; Fluck, Juliane; Jacobs, Marc
Konferenzbeitrag
2017Overview of BEL track: Extraction of complex relationships and their conversion to BEL
Madan, Sumit; Szostak, Justyna; Dörpinghaus, Jens; Hoeng, Julia; Fluck, Juliane
Konferenzbeitrag
2017Recent improvements of the BEL Information Extraction workFlow (BELIEF) for biomedical text mining and curation
Szostak, Justyna; Madan, Sumit; Hayes, William; Doerpinghaus, Jens; Fluck, Juliane; Talikka, Marja; Peitsch, Manuel C.; Hoeng, Julia
Poster
2016The BEL information extraction workflow (BELIEF): Evaluation in the BioCreative V BEL and IAT track
Madan, Sumit; Hodapp, Sven; Senger, Philipp; Ansari, Sam; Szostak, Justyna; Hoeng, Julia; Peitsch, Manuel; Fluck, Juliane
Zeitschriftenaufsatz
2016BioCreative V track 4: A shared task for the extraction of causal network information using the Biological Expression Language
Rinaldi, Fabio; Ellendorff, Tilia Renate; Madan, Sumit; Clematide, Simon; Lek, Adrian van der; Mevissen, Theo; Fluck, Juliane
Zeitschriftenaufsatz
2016Integration of UIMA text mining components into an event-based asynchronous microservice architecture
Hodapp, Sven; Madan, Sumit; Fluck, Juliane; Zimmermann, Marc
Konferenzbeitrag
2016Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)
Fluck, Juliane; Madan, Sumit; Ansari, Sam; Kodamullil, Alpha T.; Karki, Reagon; Rastegar-Mojarad, Majid; Catelett, Natalie L.; Hayes, William; Szostak, Justyna; Hoeng, Julia; Peitsch, Manuel C.
Zeitschriftenaufsatz
2015BELIEF dashboard - a web-based curation interface to support generation of BEL networks
Madan, Sumit; Hodapp, Sven; Fluck, Juliane
Konferenzbeitrag
2015BioCreative V a new challenge in text mining for biocuration
Arighi, Cecilia N.; Chatraryamontri, Andrew; Kevin, Cohen B.; Comeau, Donald; Fluck, Juliane; Dogan, Rezarta Islamaj; Hirschman, Lynette; Kim, Sun; Krallinger, Martin; Leitner, Florian; Lu, Zhiyong; Oyarzabal, Julen; Rabal, Obdulia; Rinaldi, Fabio; Tudor, Catalina O.; Valencia, Alfonso; Wiegers, Thomas; Wilbur, John; Wu, Cathy H.
Abstract
2015Construction of biological networks from unstructured information based on a semi-automated curation workflow
Szostak, Justyna; Ansari, Sam; Madan, Sumit; Fluck, Juliane; Talikka, Marja; Iskandar, Anita; Leon, Hector de; Hofmann-Apitius, Martin; Peitsch, Manuel C.; Hoeng, Julia
Zeitschriftenaufsatz
2015Data management and processing in toxicoinformatics - from chemical databases to automatic extraction of unstructured resources
Fluck, Juliane; Zimmermann, Marc
Aufsatz in Buch
2015Interpretation of large scale biological data facilitated by curated causal biological network models
Szostak, Justyna; Ansari, Sam; Boue, Stephanie; Talikka, Marja; Fluck, Juliane; Peitsch, Manuel; Hoeng, Julia
Abstract
2015Overview of the interactive task in BioCreative V
Wang, Qinghua; Abdul, Shabbir Syed; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi Itzel; BatistaNavarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Fluck, Juliane; Gama, Socorro; Gkoutos, Georgios; Irin, Afroza Khanam; Jensen, Lars Juhl; Jimenez, Silvia; Jue, Toni Rose; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Salgado, David; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa Dhwani; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-aryamontri, Andrew; Laulederkind, Stan; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Auken, Kimberly Van; Lu, Zhiyong; Schaeffer, Mary; Hirschman, Lynette; Arighi, Cecilia
Konferenzbeitrag
2015Track 4 overview: Extraction of causal network information in biological expression language (BEL)
Fluck, Juliane; Madan, Sumit; Ellendorf, Tilia; Mevissen, Heinz-Theodor; Clematide, Simon; Lek, Adrian van der; Rinaldi, Fabio
Konferenzbeitrag
2014BELIEF - a semiautomatic workflow for BEL network creation
Fluck, Juliane; Madan, Sumit; Ansari, Sam; Szostak, Justyna; Hoeng, Julia; Zimmermann, Marc; Hofmann-Apitius, Martin; Peitsch, Manuel C
Konferenzbeitrag
2014Text mining for systems biology
Fluck, Juliane; Hofman-Apitius, Martin
Zeitschriftenaufsatz
2013BEL networks derived from qualitative translations of BioNLP shared task annotations
Fluck, Juliane; Klenner, Alexander; Madan, Sumit; Ansari, Sam; Bobic, Tamara; Hoeng, Julia; Hofman-Apitius, Martin; Peitsch, Manuel
Konferenzbeitrag
2013A business logic system for mining German patient records
Senger, Philipp; Klenner, Alexander; Fluck, Juliane
Abstract
2013Experience made using public cloud infrastructure to analyse clinical patient data
Ziegler, Wolfgang; Ihle, Matthias; Claus, Steffen; Senger, Philipp; Mohebbi, Pooya; Khan, Zakir; Fluck, Juliane; Griebel, Lena; Sedlmayr, Martin; Berger, Florian; Laufer, Julian; Chatziastros, Astros; Drepper, Johannes
Konferenzbeitrag
2013SCAI: Extracting drug-drug interactions using a rich feature vector
Bobic, Tamara; Fluck, Juliane; Hofmann-Apitius, Martin
Konferenzbeitrag
2012Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports
Gurulingappa, Harsha; Rajput, Abdul-Mateen; Roberts, Angus; Fluck, Juliane; Hofmann-Apitius, Martin; Toldo, Luca
Zeitschriftenaufsatz
2012Mining biomarker information in biomedical literature
Younesi, Erfan; Toldo, Luca; Müller, Bernd; Friedrich, Christoph M.; Novac, Natalia; Scheer, Alexander; Hofmann-Apitius, Martin; Fluck, Juliane
Zeitschriftenaufsatz
2011Information retrieval framework for technology survey in biomedical and chemistry literature
Gurulingappa, Harsha; Müller, Bernd; Hofmann-Apitius, Martin; Fluck, Juliane
Konferenzbeitrag
2011Overview of the TREC 2011 Chemical IR Track
Lupu, Mihai; Jiashu, Zhao; Huang, Jimmy; Gurulingappa, Harsha; Fluck, Juliane; Zimmermann, Marc; Filippov, Igor; Tait, John
Konferenzbeitrag
2011A semantic platform for information retrieval from e-health records
Gurulingappa, Harsha; Müller, Bernd; Hofmann-Apitius, Martin; Fluck, Juliane
Konferenzbeitrag