Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2018Comparative RNA genomics
Backofen, Rolf; Gorodkin, Jan; Hofacker, Ivo L.; Stadler, Peter F.
Book Article
2016Pseudoknots in RNA folding landscapes
Kucharík, Marcel; Hofacker, Ivo L.; Stadler, Peter F.; Qin, Jing
Journal Article
2016RNA folding with hard and soft constraints
Lorenz, Ronny; Hofacker, Ivo L.; Stadler, Peter F.
Journal Article
2015Product grammars for alignment and folding
Höner zu Siederdissen, Christian; Hofacker, Ivo L.; Stadler, Peter F.
Journal Article
2014Basin hopping graph: A computational framework to characterize RNA folding landscapes
Kucharík, Marcel; Hofacker, Ivo L.; Stadler, Peter F.; Qin, Jing
Journal Article
2014TSSAR: TSS annotation regime for dRNA-seq data
Amman, Fabian; Wolfinger, Michael T.; Lorenz, Ronny; Hofacker, Ivo L.; Stadler, Peter F.; Findeiß, Sven
Journal Article
2013Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
Müller, Stephan A.; Findeiß, Sven; Pernitzsch, Sandy R.; Wissenbach, Dirk K.; Stadler, Peter F.; Hofacker, Ivo L.; Bergen, Martin von; Kalkhof, Stefan
Journal Article
2013The RNAsnp web server: Predicting SNP effects on local RNA secondary structure
Sabarinathan, Radhakrishnan; Tafer, Hakim; Seemann, Stefan E.; Hofacker, Ivo L.; Stadler, Peter F.; Gorodkin, Jan
Journal Article
2013RNAsnp: Efficient detection of local RNA secondary structure changes induced by SNPs
Sabarinathan, Radhakrishnan; Tafer, Hakim; Seemann, Stefan E.; Hofacker, Ivo L.; Stadler, Peter F.; Gorodkin, Jan
Journal Article
2012LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs
Will, Sebastian; Joshi, Tejal; Hofacker, Ivo L.; Stadler, Peter F.; Backofen, Rolf
Journal Article
2012Symmetric circular matchings and RNA folding
Hofacker, Ivo L.; Reidys, Christian M.; Stadler, Peter F.
Journal Article
2011Fast accessibility-based prediction of RNA-RNA interactions
Tafer, Hakim; Amman, Fabian; Eggenhofer, Florian; Stadler, Peter F.; Hofacker, Ivo L.
Journal Article
2011A folding algorithm for extended RNA secondary structures
Höner zu Siederdissen, Christian; Bernhart, Stephan H.; Stadler, Peter F.; Hofacker, Ivo L.
Journal Article, Conference Paper
2011RNApredator: fast accessibility-based prediction of sRNA targets
Eggenhofer, Florian; Tafer, Hakim; Stadler, Peter F.; Hofacker, Ivo L.
Journal Article
2010BarMap: RNA folding on dynamic energy landscapes
Hofacker, Ivo L.; Flamm, Christoph; Heine, Christian; Wolfinger, Michael T.; Scheuermann, Gerik; Stadler, Peter F.
Journal Article
2010Computational studies on non-coding RNAS - session introduction
Backofen, Rolf; Chitsaz, Hamidreza; Hofacker, Ivo L.; Sahinalp, S. Cenk; Stadler, Peter F.
Conference Paper
2010RNAZ 2.0. Improved noncoding RNA detection
Gruber, Andreas R.; Findeiß, Sven; Washietl, Stefan; Hofacker, Ivo L.; Stadler, Peter F.
Conference Paper
2008RNAalifold. Improved consensus structure prediction for RNA alignments
Bernhart, Stephan H.; Hofacker, Ivo L.; Will, Sebastian; Gruber, Andreas R.; Stadler, Peter F.
Journal Article
2007RNAs everywhere: Genome-wide annotation of structured RNAs
Backofen, Rolf; Bernhart, Stephan H.; Flamm, Christoph; Fried, Claudia; Fritzsch, Guido; Hackermüller, Jörg; Hertel, Jana; Hofacker, Ivo L.; Missal, Kristin; Mosig, Axel; Prohaska, Sonja J.; Rose, Dominic; Stadler, Peter F.; Tanzer, Andrea; Washietl, Stefan; Will, Sebastian
Journal Article