Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2019uap: Reproducible and robust HTS data analysis
Kämpf, Christoph; Specht, Michael; Scholz, Alexander; Puppel, Sven Holger; Doose, Gero; Reiche, Kristin; Schor, Jana; Hackermüller, Jörg
Journal Article
2018Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA
Rehage, Nina; Davydova, Elena; Conrad, Christine; Behrens, Gesine; Maiser, Andreas; Stehklein, Jenny E.; Brenner, Sven; Klein, Juliane; Jeridi, Aicha; Hoffmann, Anne; Lee, Eunhae; Dianzani, Umberto; Willemsen, Rob; Feederle, Regina; Reiche, Kristin; Hackermüller, Jörg; Leonhardt, Heinrich; Sharma, Sonia; Niessing, Dierk; Heissmeyer, Vigo
Journal Article
2018Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Essig, Katharina; Kronbeck, Nina; Guimaraes, Joao C.; Lohs, Claudia; Schlundt, Andreas; Hoffmann, Anne; Behrens, Gesine; Brenner, Sven; Kowalska, Joanna; Lopez-Rodriguez, Cristina; Jemielity, Jacek; Reiche, Kristin; Holtmann, Helmut; Hackermüller, Jörg; Sattler, Michael; Zavolan, Mihaela; Heissmeyer, Vigo
Journal Article
2017Discovery and validation of immunological biomarkers in milk for health monitoring of dairy cows
Zoldan, Katharina; Schneider, Josephine; Möllmer, T.; Füldner, Christiane; Knauer, Jens; Fürll, M.; Starke, A.; Specht, Michael; Hackermüller, Jörg; Kalkhof, Stefan; Bergen, M. von; Bergfeld, U.; Fischer, R.; Pache, S.; Lehmann, Jörg
Journal Article
2015Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
Kirsten, Holger; Al-Hasani, Hoor; Holdt, Lesca M.; Gross, Arndt; Beutner, Frank; Krohn, Knut; Horn, Katrin; Ahnert, Peter; Burkhardt, Ralph; Reiche, Kristin; Hackermüller, Jörg; Löffler, Marcus; Teupser, Daniel; Thiery, Joachim; Scholz, Markus
Journal Article
2015Novel RNA-biomarkers for diagnosis and prognosis of prostate carcinoma
Horn, Friedemann; Hackermüller, Jörg; Christ-Breulmann, Sabina; Reiche, Kristin; Wirth, Manfred; Fröhner, Michael; Füssel, Susanne
Patent
2014Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
Hackermüller, Jörg; Reiche, Kristin; Otto, Christian; Hösler, Nadine; Blumert, Conny; Brocke-Heidrich, Katja; Böhlig, Levin; Nitsche, Anne; Kasack, Katharina; Ahnert, Peter; Krupp, Wolfgang; Engeland, Kurt; Stadler, Peter F.; Horn, Friedemann
Journal Article
2014CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era
Arnold, Christian; Externbrink, Fabian; Hackermüller, Jörg; Reiche, Kristin
Journal Article
2014Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
Reiche, Kristin; Kasack, Katharina; Schreiber, Stephan; Lüders, Torben; Due, Eldri U.; Naume, Bjørn; Riis, Margit; Kristensen, Vessela N.; Horn, Friedemann; Børresen-Dale, Anne-Lise; Hackermüller, Jörg; Baumbusch, Lars O.
Journal Article
2014A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Hoffmann, Steve; Otto, Christian; Doose, Gero; Tanzer, Andrea; Langenberger, David; Christ, Sabina; Kunz, Manfred; Holdt, Lesca M.; Teupser, Daniel; Hackermüller, Jörg; Stadler, Peter F.
Journal Article
2013MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
Boll, Kerstin; Reiche, Kristin; Kasack, Katharina; Mörbt, N.; Kretzschmar, Antje K.; Tomm, J.M.; Verhaegh, G.; Schalken, J.; Bergen, Martin von; Horn, Friedemann; Hackermüller, Jörg
Journal Article
2012CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases
Wuttig, Daniela; Zastrow, Stefan; Füssel, Susanne; Toma, Marieta I.; Meinhardt, Matthias; Kalman, Kristin; Junker, Kerstin; Sanjmyatav, Jimsgene; Boll, Kerstin; Hackermüller, Jörg; Rolle, Axel; Grimm, Marc-Oliver; Wirth, Manfred P.
Journal Article
2012Detection of differentially expressed segments in tiling array data
Otto, Christian; Reiche, Kristin; Hackermüller, Jörg
Journal Article
2011Bioinformatics for RNomics
Reiche, Kristin; Schutt, Katharina; Boll, Kerstin; Horn, Friedemann; Hackermüller, Jörg
Book Article
2011Computational discovery of human coding and non-coding transcripts with conserved splice sites
Rose, Dominic; Hiller, Michael; Schutt, Katharina; Hackermüller, Jörg; Backofen, Rolf; Stadler, Peter F.
Journal Article
2009Evolution of vault RNAs
Stadler, Peter F.; Chen, Julian J.-L.; Hackermüller, Jörg; Hoffmann, Steve; Horn, Friedemann; Khaitovich, Phillip; Kretzschmar, Antje K.; Mosig, Axel; Prohaska, Sonja J.; Qi, Xiaodong; Schutt, Katharina; Ullmann, Kerstin
Journal Article
2009Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Hoffmann, Steve; Otto, Christian; Kurtz, Stefan; Sharma, Cynthia M.; Khaitovich, Philipp; Vogel, Jörg; Stadler, Peter F.; Hackermüller, Jörg
Journal Article
2008Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
Sonnleitner, Elisabeth; Sorger-Domenigg, Theresa; Madej, Monika J.; Findeiß, Sven; Hackermüller, Jörg; Hüttenhofer, Alexander; Stadler, Peter F.; Bläsi, Udo; Moll, Isabella
Journal Article
2008Duplicated RNA genes in teleost fish genomes
Rose, Dominic; Jöris, Julian; Hackermüller, Jörg; Reiche, Kristin; Li,; Stadler, Peter F.
Journal Article
2007Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Hackermüller, Jörg et al.
Journal Article
2007RNAs everywhere: Genome-wide annotation of structured RNAs
Backofen, Rolf; Bernhart, Stephan H.; Flamm, Christoph; Fried, Claudia; Fritzsch, Guido; Hackermüller, Jörg; Hertel, Jana; Hofacker, Ivo L.; Missal, Kristin; Mosig, Axel; Prohaska, Sonja J.; Rose, Dominic; Stadler, Peter F.; Tanzer, Andrea; Washietl, Stefan; Will, Sebastian
Journal Article