Fraunhofer-Gesellschaft

Publica

Hier finden Sie wissenschaftliche Publikationen aus den Fraunhofer-Instituten.
2019uap: Reproducible and robust HTS data analysis
Kämpf, Christoph; Specht, Michael; Scholz, Alexander; Puppel, Sven Holger; Doose, Gero; Reiche, Kristin; Schor, Jana; Hackermüller, Jörg
Journal Article
2018Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA
Rehage, Nina; Davydova, Elena; Conrad, Christine; Behrens, Gesine; Maiser, Andreas; Stehklein, Jenny E.; Brenner, Sven; Klein, Juliane; Jeridi, Aicha; Hoffmann, Anne; Lee, Eunhae; Dianzani, Umberto; Willemsen, Rob; Feederle, Regina; Reiche, Kristin; Hackermüller, Jörg; Leonhardt, Heinrich; Sharma, Sonia; Niessing, Dierk; Heissmeyer, Vigo
Journal Article
2018Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Essig, Katharina; Kronbeck, Nina; Guimaraes, Joao C.; Lohs, Claudia; Schlundt, Andreas; Hoffmann, Anne; Behrens, Gesine; Brenner, Sven; Kowalska, Joanna; Lopez-Rodriguez, Cristina; Jemielity, Jacek; Reiche, Kristin; Holtmann, Helmut; Hackermüller, Jörg; Sattler, Michael; Zavolan, Mihaela; Heissmeyer, Vigo
Journal Article
2017Discovery and validation of immunological biomarkers in milk for health monitoring of dairy cows
Zoldan, Katharina; Schneider, Josephine; Möllmer, T.; Füldner, Christiane; Knauer, Jens; Fürll, M.; Starke, A.; Specht, Michael; Hackermüller, Jörg; Kalkhof, Stefan; Bergen, M. von; Bergfeld, U.; Fischer, R.; Pache, S.; Lehmann, Jörg
Journal Article
2017STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer
Binder, S.; Hösler, N.; Riedel, D.; Zipfel, I.; Buschmann, T.; Kämpf, C.; Reiche, K.; Burger, R.; Gramatzki, M.; Hackermüller, J.; Stadler, P.F.; Horn, F.
Journal Article
2015Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci
Kirsten, Holger; Al-Hasani, Hoor; Holdt, Lesca M.; Gross, Arndt; Beutner, Frank; Krohn, Knut; Horn, Katrin; Ahnert, Peter; Burkhardt, Ralph; Reiche, Kristin; Hackermüller, Jörg; Löffler, Marcus; Teupser, Daniel; Thiery, Joachim; Scholz, Markus
Journal Article
2015Novel RNA-biomarkers for diagnosis and prognosis of prostate carcinoma
Horn, Friedemann; Hackermüller, Jörg; Christ-Breulmann, Sabina; Reiche, Kristin; Wirth, Manfred; Fröhner, Michael; Füssel, Susanne
Patent
2014Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
Hackermüller, Jörg; Reiche, Kristin; Otto, Christian; Hösler, Nadine; Blumert, Conny; Brocke-Heidrich, Katja; Böhlig, Levin; Nitsche, Anne; Kasack, Katharina; Ahnert, Peter; Krupp, Wolfgang; Engeland, Kurt; Stadler, Peter F.; Horn, Friedemann
Journal Article
2014CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era
Arnold, Christian; Externbrink, Fabian; Hackermüller, Jörg; Reiche, Kristin
Journal Article
2014A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
Rivarola-Duarte, L.; Otto, C.; Jühling, F.; Schreiber, S.; Bedulina, D.; Jakob, L.; Gurkov, A.; Axenov-Gribanov, D.; Sahyoun, A.H.; Lucassen, M.; Hackermüller, J.; Hoffmann, S.; Sartoris, F.; Pörtner, H.-O.; Timofeyev, M.; Luckenbach, T.; Stadler, P.F.
Journal Article
2014Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
Reiche, Kristin; Kasack, Katharina; Schreiber, Stephan; Lüders, Torben; Due, Eldri U.; Naume, Bjørn; Riis, Margit; Kristensen, Vessela N.; Horn, Friedemann; Børresen-Dale, Anne-Lise; Hackermüller, Jörg; Baumbusch, Lars O.
Journal Article
2014A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Hoffmann, Steve; Otto, Christian; Doose, Gero; Tanzer, Andrea; Langenberger, David; Christ, Sabina; Kunz, Manfred; Holdt, Lesca M.; Teupser, Daniel; Hackermüller, Jörg; Stadler, Peter F.
Journal Article
2013MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma
Boll, Kerstin; Reiche, Kristin; Kasack, Katharina; Mörbt, N.; Kretzschmar, Antje K.; Tomm, J.M.; Verhaegh, G.; Schalken, J.; Bergen, Martin von; Horn, Friedemann; Hackermüller, Jörg
Journal Article
2012CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases
Wuttig, Daniela; Zastrow, Stefan; Füssel, Susanne; Toma, Marieta I.; Meinhardt, Matthias; Kalman, Kristin; Junker, Kerstin; Sanjmyatav, Jimsgene; Boll, Kerstin; Hackermüller, Jörg; Rolle, Axel; Grimm, Marc-Oliver; Wirth, Manfred P.
Journal Article
2012Detection of differentially expressed segments in tiling array data
Otto, Christian; Reiche, Kristin; Hackermüller, Jörg
Journal Article
2011Bioinformatics for RNomics
Reiche, Kristin; Schutt, Katharina; Boll, Kerstin; Horn, Friedemann; Hackermüller, Jörg
Book Article
2011Computational discovery of human coding and non-coding transcripts with conserved splice sites
Rose, Dominic; Hiller, Michael; Schutt, Katharina; Hackermüller, Jörg; Backofen, Rolf; Stadler, Peter F.
Journal Article
2011Differential expression of non-coding transcripts in breast cancer cells
Kasack, K.; Reiche, K.; Horn, F.; Hackermüller, J.
Conference Paper
2011Identification of non-coding RNAs regulated by activation in CD4+ T cells
Hösler, N.; Hackermüller, J.; Reiche, K.; Rockstroh, M.; Tomm, J.; Bergen, M. von; Horn, F.
Conference Paper
2011LNCaP xenograft mouse model for investigating the therapeutic potential of three microRNAs downregulated in prostate cancer
Ascherl, R.; Boll, K.; Reiche, K.; Kasack, K.; Kretzschmar, A.K.; Tomm, J.; Horn, F.; Hackermüller, J.; Mörbt, N.; Verhaegh, G.; Schalken, J.; Bergen, M. von
Conference Paper
2010Molecular signatures of long non-coding RNAs in breast cancer patients
Baumbusch, L.O.; Reiche, K.; Schutt, K.; Schreiber, S.; Due, E.U.; Lüders, T.; Kristensen, V.N.; Horn, F.; Hackermüller, J.; Borresen-Dale, A.L.
Abstract
2010Non-protein coding RNAs in breast cancer initiating cells
Schutt, K.; Reiche, K.; Boll, K.; Horn, F.; Hackermüller, J.
Abstract
2010The primary transcriptome of the major human pathogen Helicobacter pylori
Sharma, C.M.; Hoffmann, S.; Darfeuille, F.; Reignier, J.; Findeiß, S.; Sittka, A.; Chabas, S.; Reiche, K.; Hackermüller, J.; Reinhardt, R.; Stadler, P.F.; Vogel, J.
Journal Article
2009Biomarker: Die Neue Welt der ncRNAs und ihre medizinische Relevanz
Hackermüller, J.; Horn, F.; Stadler, P.F.; Buller, B.
Journal Article
2009Evolution of vault RNAs
Stadler, Peter F.; Chen, Julian J.-L.; Hackermüller, Jörg; Hoffmann, Steve; Horn, Friedemann; Khaitovich, Phillip; Kretzschmar, Antje K.; Mosig, Axel; Prohaska, Sonja J.; Qi, Xiaodong; Schutt, Katharina; Ullmann, Kerstin
Journal Article
2009Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Hoffmann, Steve; Otto, Christian; Kurtz, Stefan; Sharma, Cynthia M.; Khaitovich, Philipp; Vogel, Jörg; Stadler, Peter F.; Hackermüller, Jörg
Journal Article
2009HLA-alleles determine the risk to develop antibodies against interferon-beta therapy in multiple sclerosis
Buck, D.; Cepok, S.; Hoffmann, S.; Grummel, V.; Lehmann-Horn, K.; Hackermüller, J.; Stadler, P.F.; Hartung, H.-P.; Berthele, A.; Deisenhammer, F.; Wassmuth, R.; Hemmer, B.
Abstract
2009Identification and characterization of IL-6-regulated ncRNAs
Grollmütz, N.; Brocke-Heidrich, K.; Jahndel, V.; Schramedei, K.; Hackermüller, J.; Kretzschmar, A.; Blumert, C.; Horn, F.
Abstract
2009Long non-protein coding RNAs in oncogenic pathways
Hackermüller, J.; Brocke-Heidrich, K.; Reiche, K.; Kretzschmar, A.; Schutt, K.; Ahnert, P.; Böhlig, L.; Stadler, P.F.; Engeland, K.; Horn, F.
Abstract
2009Non-protein coding RNAs as highly specific biomarkers for cancer
Schutt, K.; Horn, F.; Ullmann, K.; Kretzschmar, A.; Hackermüller, J.
Abstract
2009Regulation of non-protein-coding RNA genes by the Stat3 pathway
Horn, F.; Brocke-Heidrich, K.; Hackermüller, J.; Stadler, P.
Abstract
2009Transcriptome profiling reveals many novel p53-regulated human non-coding RNAs
Böhlig, L.; Hackermüller, J.; Rose, D.; Reiche, K.; Kretzschmar, A.; Stadler, P.F.; Horn, F.; Engeland, K.
Abstract
2008Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
Sonnleitner, Elisabeth; Sorger-Domenigg, Theresa; Madej, Monika J.; Findeiß, Sven; Hackermüller, Jörg; Hüttenhofer, Alexander; Stadler, Peter F.; Bläsi, Udo; Moll, Isabella
Journal Article
2008Duplicated RNA genes in teleost fish genomes
Rose, Dominic; Jöris, Julian; Hackermüller, Jörg; Reiche, Kristin; Li,; Stadler, Peter F.
Journal Article
2008HLA-DRB1 0401 and HLA-DRB1 0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis
Cepok, S.; Hoffmann, S.; Grummel, V.; Lehmann-Horn, K.; Hackermüller, J.; Stadler, P.F.; Hartung, H.-P.; Berthele, A.; Deisenhammer, F.; Wasmuth, R.; Hemmer, B.
Journal Article, Conference Paper
2008HLA-DRBI*0401 and HLA-DRB1*0408 are strongly associated with the development of antibodies against interferon-beta therapy in multiple sclerosis
Hoffmann, S.; Cepok, S.; Grummel, V.; Lehmann-Horn, K.; Hackermüller, J.; Stadler, P.F.; Hartung, H.-P.; Berthele, A.; Deisenhammer, F.; Wasmuth, R.; Hemmer, B.
Journal Article
2008NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences
Rose, D.; Hertel, J.; Reiche, K.; Stadler, P.F.; Hackermüller, J.
Journal Article
2007Computational RNomics of drosophilids
Rose, D.; Hackermüller, J.; Washietl, S.; Reiche, K.; Hertel, J.; Findeiß, S.; Stadler, P.F.; Prohaska, S.J.
Journal Article
2007Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Hackermüller, Jörg et al.
Journal Article
2007Inerleukin-6-dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer
Löffler, D.; Brocke-Heidrich, K.; Pfeifer, G.; Stocsits, C.; Hackermüller, J.; Kretzschmar, A.K.; Burger, R.; Gramatzki, M.; Blumert, C.; Bauer, K.; Cvijic, H.; Ullmann, A.K.; Stadler, P.F.; Horn, F.
Journal Article
2007RNA maps reveal new RNA classes and a possible function for pervasive transcription
Kapranov, P.; Cheng, J.; Dike, S.; Nix, D.A.; Duttagupta, R.; Willingham, A.T.; Stadler, P.F.; Hertel, J.; Hackermüller, J.; Hofacker, I.L.; Bell, I.; Cheung, E.; Drenkow, J.; Dumais, E.; Patel, S.; Helt, G.; Ganesh, M.; Ghosh, S.; Piccolboni, A.; Sementchenko, V.; Tammana, H.; Gingeras, T.R.
Journal Article
2007RNAs everywhere: Genome-wide annotation of structured RNAs
Backofen, Rolf; Bernhart, Stephan H.; Flamm, Christoph; Fried, Claudia; Fritzsch, Guido; Hackermüller, Jörg; Hertel, Jana; Hofacker, Ivo L.; Missal, Kristin; Mosig, Axel; Prohaska, Sonja J.; Rose, Dominic; Stadler, Peter F.; Tanzer, Andrea; Washietl, Stefan; Will, Sebastian
Journal Article
2007Structured RNAs in the ENCODE selected regions of the human genome
Washietl, S.; Pedersen, J.S.; Korbel, J.O.; Stocsits, C.; Gruber, A.R.; Hackermüller, J.; Hertel, J.; Lindemeyer, M.; Reiche, K.; Tanzer, A.; Ucla, C.; Wyss, C.; Antonarakis, S.E.; Denoeud, F.; Lagarde, J.; Drenkow, J.; Kapranov, P.; Gingeras, T.R.; Guigo, R.; Snyder, M.; Gerstein, M.B.; Reymond, A.; Hofacker, I.L.; Stadler, P.F.
Journal Article
2006Thermodynamics of RNA-RNA binding
Mückstein, U.; Tafer, H.; Hackermüller, J.; Bernhart, S.H.; Stadler, P.F.; Hofacker, I.L.
Journal Article